# Acore Documentation

```{include} ./sections_readme/home_page.md
:caption: VueGen
:relative-docs: docs
:relative-images:
:start-line: 0
:end-line: 40
```

```{toctree}
:maxdepth: 1
:caption: Overview
```

```{toctree}
:maxdepth: 1
:caption: API usage examples
:hidden:

api_examples/normalization_analysis
api_examples/batch_correction
api_examples/exploratory_analysis
api_examples/ANCOVA_analysis
api_examples/enrichment_analysis
```

```{toctree}
:maxdepth: 1
:caption: Reanalysis
:hidden:

PXD040621 <downloaded/PXD040621_analysis>
```

```{toctree}
:maxdepth: 1
:caption: Example dataset (preprocessing)
:hidden:

api_examples/Download_PRIDE_data
api_examples/ovarian_cancer
```

```{toctree}
:maxdepth: 2
:caption: Modules
:hidden:

reference/acore
```

## Indices and tables

- [General Index](genindex)
- [Module Index](modindex)
- [Search Page](search)

```{toctree}
:maxdepth: 1
:caption: MISC:
:hidden:

contributing
authors
history
README.md
```
