MANIFEST.in
README.md
pyproject.toml
setup.py
ABCFold.egg-info/PKG-INFO
ABCFold.egg-info/SOURCES.txt
ABCFold.egg-info/dependency_links.txt
ABCFold.egg-info/entry_points.txt
ABCFold.egg-info/requires.txt
ABCFold.egg-info/top_level.txt
abcfold/__init__.py
abcfold/abcfold.py
abcfold/argparse_utils.py
abcfold/alphafold3/check_install.py
abcfold/alphafold3/run_alphafold3.py
abcfold/boltz1/af3_to_boltz1.py
abcfold/boltz1/check_install.py
abcfold/boltz1/run_boltz.py
abcfold/chai1/af3_to_chai.py
abcfold/chai1/chai.py
abcfold/chai1/check_install.py
abcfold/chai1/run_chai1.py
abcfold/data/config.ini
abcfold/html/abcfold.html.jinja2
abcfold/html/abcfold_vue.js
abcfold/html/bootstrap.css
abcfold/html/feature-viewer.bundle.js
abcfold/html/html_utils.py
abcfold/html/index.css
abcfold/html/jquery.js
abcfold/html/lodash.min.js
abcfold/html/style.css
abcfold/html/vue.min.js
abcfold/html/static/ABCfold-logo.svg
abcfold/html/static/favicon.svg
abcfold/html/static/main_page_example.png
abcfold/html/static/pae_viewer_example.png
abcfold/output/alphafold3.py
abcfold/output/atoms.py
abcfold/output/boltz.py
abcfold/output/chai.py
abcfold/output/file_handlers.py
abcfold/output/utils.py
abcfold/plots/pae_plot.py
abcfold/plots/plddt_plot.py
abcfold/plots/pae-viewer-main/src/jsonify_scores.py
abcfold/plots/pae-viewer-main/src/css/complex-sequence-viewer.css
abcfold/plots/pae-viewer-main/src/css/pae-viewer.css
abcfold/plots/pae-viewer-main/src/css/structure-carousel.css
abcfold/plots/pae-viewer-main/src/css/structure-panel.css
abcfold/plots/pae-viewer-main/src/css/structure-viewer.css
abcfold/plots/pae-viewer-main/src/img/bootstrap-icons/arrows-fullscreen.svg
abcfold/plots/pae-viewer-main/src/img/bootstrap-icons/camera.svg
abcfold/plots/pae-viewer-main/src/img/bootstrap-icons/download.svg
abcfold/plots/pae-viewer-main/src/img/bootstrap-icons/exclamation-circle.svg
abcfold/plots/pae-viewer-main/src/img/bootstrap-icons/fullscreen-exit.svg
abcfold/plots/pae-viewer-main/src/img/bootstrap-icons/question-circle.svg
abcfold/plots/pae-viewer-main/src/img/pae-demo/favicon.svg
abcfold/plots/pae-viewer-main/src/img/pae-demo/screenshot-pae-viewer-overlapping-selection.png
abcfold/plots/pae-viewer-main/src/img/pae-demo/screenshot-pae-viewer-point-selection.png
abcfold/plots/pae-viewer-main/src/img/pae-demo/screenshot-pae-viewer-range-selection.png
abcfold/plots/pae-viewer-main/src/img/pae-demo/screenshot-pae-viewer-regions.png
abcfold/plots/pae-viewer-main/src/img/pae-demo/screenshot-pae-viewer.png
abcfold/plots/pae-viewer-main/src/modules/complex-sequence-viewer.js
abcfold/plots/pae-viewer-main/src/modules/pae-viewer-demo.js
abcfold/plots/pae-viewer-main/src/modules/pae-viewer.js
abcfold/plots/pae-viewer-main/src/modules/predicted-complex.js
abcfold/plots/pae-viewer-main/src/modules/read-crosslinks.js
abcfold/plots/pae-viewer-main/src/modules/read-scores.js
abcfold/plots/pae-viewer-main/src/modules/read-structure.js
abcfold/plots/pae-viewer-main/src/modules/structure-carousel.js
abcfold/plots/pae-viewer-main/src/modules/structure-meta.js
abcfold/plots/pae-viewer-main/src/modules/structure-panel.js
abcfold/plots/pae-viewer-main/src/modules/structure-style.js
abcfold/plots/pae-viewer-main/src/modules/structure-viewer.js
abcfold/plots/pae-viewer-main/src/modules/utils.js
abcfold/plots/pae-viewer-main/src/templates/complex-sequence-viewer.tpl
abcfold/plots/pae-viewer-main/src/templates/pae-viewer.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemoLayout.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__consent.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__help.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__help__ptms.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__help__sequence.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__help__structure.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__help__upload.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__help__viewer.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__news.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__tab__citation.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__tab__examples.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__tab__offline.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__tab__upload.tpl
abcfold/plots/pae-viewer-main/src/templates/paeViewerDemo__tabs.tpl
abcfold/plots/pae-viewer-main/src/templates/structure-carousel.tpl
abcfold/plots/pae-viewer-main/src/templates/structure-panel-demo.tpl
abcfold/plots/pae-viewer-main/src/templates/structure-panel.tpl
abcfold/plots/pae-viewer-main/src/templates/structure-viewer.tpl
abcfold/plots/pae-viewer-main/standalone/create_template.py
abcfold/plots/pae-viewer-main/standalone/favicon.svg
abcfold/plots/pae-viewer-main/standalone/pae_viewer.py
abcfold/plots/pae-viewer-main/standalone/css/common.css
abcfold/plots/pae-viewer-main/standalone/css/paeViewerStandaloneLayout.css
abcfold/plots/pae-viewer-main/standalone/css/paeViewerStandaloneLayoutAF3.css
abcfold/plots/pae-viewer-main/standalone/css/paeViewerStandaloneLayoutBoltz.css
abcfold/plots/pae-viewer-main/standalone/css/paeViewerStandaloneLayoutChai.css
abcfold/plots/pae-viewer-main/standalone/css/paeViewerStandaloneOverrides.css
abcfold/plots/pae-viewer-main/standalone/js/pae-viewer-standalone.js
abcfold/plots/pae-viewer-main/standalone/js/setup.js
abcfold/plots/pae-viewer-main/standalone/libs/FileSaver.min.js
abcfold/plots/pae-viewer-main/standalone/libs/bootstrap.bundle.min.js
abcfold/plots/pae-viewer-main/standalone/libs/bootstrap.min.css
abcfold/plots/pae-viewer-main/standalone/libs/bootstrap@5.1.3.css
abcfold/plots/pae-viewer-main/standalone/libs/chroma.min.js
abcfold/plots/pae-viewer-main/standalone/libs/jquery-ui.min.js
abcfold/plots/pae-viewer-main/standalone/libs/jquery.min.js
abcfold/plots/pae-viewer-main/standalone/libs/ngl.js
abcfold/scripts/abc_script_utils.py
abcfold/scripts/add_custom_template.py
abcfold/scripts/add_mmseqs_msa.py
tests/test_abcfold.py
tests/test_add_mmseqs2.py
tests/test_af3_output.py
tests/test_af3_to_boltz.py
tests/test_af3_to_chai.py
tests/test_argparse.py
tests/test_boltz_output.py
tests/test_chai_output.py
tests/test_custom_template.py
tests/test_file_handlers.py
tests/test_logging.py
tests/test_plots.py
tests/test_run_alphafold3.py
tests/test_run_boltz.py
tests/test_run_chai.py
tests/test_run_scripts.py
tests/test_utilities.py